Where is the noise coming from?
If from another unit, ie satnav, make sure that both units are from the same power point. I had very loud interference, changed so that both units were from aux plug, and the noise was gone
I hadnt read your post in time but did figure out that it may have been a ground loop. The radio to comms lead needed some isolation so a optocoupler for the PTT, and two 1:1 transformers from 2 old modems, a little perf board, some burnt fingers and swearing later and I have a working solution.
Im still suffering from overdeviation, the Autocom is overdriving the audio a little so im going to fit a voltage divider circuit on the mic line to give me some adjustability on the comms cable. I tried adjusting the internal pot in the autocom but I cant seem to get it right.
I rang autocom twice and I'm dissapointed to say they were useless, sold me stuff which didnt help and gave me poor advice. When I have it running perfectly I will take some time to share with them a complaint and the info that they should have given me so they can help any other poor souls suffering from the same problem.