had a look at the wiring diagrams and cannot find anything relating to hazard equipped bikes. Must be a bit of extra circuitry somewhere as they will stay on once activated even with the ignition off.
Ordinarily the relief relay (top left in the relay box) provides power through to the flasher unit as well as other things(bottom center) and then on to the indicator switch. The hazard equipped bikes might have a latching circuit somewhere (and an extra relay) that tells the unit to continue flashing once the ignition is off. Have you replaced the flasher unit yet?
It might be that once you've replaced the flasher unit the hazards will work correctly, they will use the same unit for both, just switched on a slightly different way.