Hi,
Thinking back, I re-built a box from a 1992 R100R that turned out to have been made in 1980/81:
It was a perfectly normal 'Paralever' box - though I didn't see the clutch pushrod bits. It did have a 'Mono' oil seal in it though (I replaced that with a Paralever one).
I think that proves that your R65 box will be fine.
The output flanges will be the same, they are on a taper that is torqued-up to 162 lbs/ft. It helps to have the pukka puller for the job.
The 'Cycleworks' puller:
The BMW puller:
I don't see any problems in having the Paralever output seal in a Mono - the Mono has oil in the leg anyway so adding a bit from the gearbox was just expediency I guess.
The Para runs dry so oil down the leg is a bad idea.
I have never tried a box without shims, but all the received wisdom is that it is necessary. We shim them to 0.05mm clearance which isn't much of a gap (certainly less than a British Standard Baw' Hair

).
I think it will all be fine

.
Bob.