I'd disagree with that assertion, v8. The ABS system absolutely DOES affect the hydraulics (the fluid path is through the modulator block).
OP, there's no problem bleeding an ABS system, but do try to close the system up if any parts are removed- if the fluid should happen to syphon out, getting airlocks out of the ABS block can be near impossibly in some cases. Likewise ensure the ABS is not actuated with the system open/empty as you could end up with air in the part of the block that is only in the fluid path during ABS pressure dump/restore- an even bigger nightmare to bleed.
And when doing a flush, it's good to actuate the ABS after some fresh fluid has gone through and then flush some more, else there'll be a slug of ancient fluid stuck in the block...