Just some immediate thoughts on reading these posts.
You say you've fitted a new, OEM shaft? How did that go? I wondered if the shaft hasn't been hit home at the output from the gearbox, so the spring ring isn't engaged, meaning the shaft still be a little closer to the FD all the time? Maybe it's not possible to complete the assembly if it's not pushed home? As said, a first thought!
The second thought was, if the drive shaft is making contact with the swing arm tunnel, then surely you'd be able to see where by now, some visible marks, somewhere?
The other obvious thing is, if the shocks have been rebuilt and finally it's all in the right place, then on the centre stand, there is a really good chance you'll hear the UJs making contact with the swing arm as you rotate the wheel, especially when you consider Pick Meister's comment above... meaning all is normal!
I'm thinking all is in fact just fine

You say you've fitted a new, OEM shaft? How did that go? I wondered if the shaft hasn't been hit home at the output from the gearbox, so the spring ring isn't engaged, meaning the shaft still be a little closer to the FD all the time? Maybe it's not possible to complete the assembly if it's not pushed home? As said, a first thought!
The second thought was, if the drive shaft is making contact with the swing arm tunnel, then surely you'd be able to see where by now, some visible marks, somewhere?
The other obvious thing is, if the shocks have been rebuilt and finally it's all in the right place, then on the centre stand, there is a really good chance you'll hear the UJs making contact with the swing arm as you rotate the wheel, especially when you consider Pick Meister's comment above... meaning all is normal!
I'm thinking all is in fact just fine