Thanks to all for the many and varied replies
I titled the thread "nuance vs misunderstandings" and we got the full set that I was thinking of. Many offered advice on what I should actually do. What I was asking was whether "full throttle" and high revs were intended to mean the same thing in the MotoMan method? I was trying to explore the possiblity that
they are not.
Some people question why I would think of disregarding the book. I'm not arguing with the book, I'm trying to clarify what it is that the book really says/means. As far as I can see it does not tell you how much throttle to use, it just gives a rev limit. I suspect some people do not consider this factor at all, just rev ceilings.
Some people talk about having finished running in - at 600 miles. Someone asked me why I want to do a 'better job' this time? My experience with my 2008 GS is that after 600 miles it was run in - in the book sense, but with 7500 miles on the clock today I don't consider it fully run in because it still needs a top up of oil regularly. Many say this is normal, but there are plenty on this thread alone that have managed to run their bikes in such that they don't use enough to require a top up between 6000 mile service intervals.
It's also interesting to note that people think it's normal to top up with oil, and they think it's normal for the bike to stop using oil around 10-12k miles. But they think it's odd for someone to take steps to get to the 2nd condition from the start.
Someone else questioned whether I would be able to tell the difference. Compared to the 2010 GSA demo bike with just 850 miles on the clock, I feel my 7500 mile 2008 GS is noticably more powerful, and I'm pretty sure it has some way to go. And I'm sure when that 2010 has some proper miles on the clock it will show my old 2008 a clean tail-pipe!
I totally see GSmonkey's point about not bothering with running it in if you change bikes every 2 years. This is going to be my 2nd GS - an A this time. At this point I'm hoping I'll keep it longer. The first bike was a standard GS, and I bought it because I wasn't sure if I would really get on with the big twin engine or trail styling, coming from a VFR, but I always hankered after the GSA. The thing I like least about buying a new R1200 is the thought that I could be riding it for 2 or 3 years just basically running it in, reaching the magic 12k miles just in time to hand it over to someone else! So I'm keen to get there as early as possible.
I do appreciate everyone's comments, thanks for taking the time to offer guidance, information and support

The links provided by SKON (with help from roddy) and topbanana were just amazing. Let me repeat them:
I
implore anyone who feels "follow the book" (whatever that really means) is the only game in town to read at least the 1st of those 2. If that link was quoted instead of the MotoMan link in future threads, I don't think we would have these discussions at all. MotoMan's bravado is fun, but the sensationalist style and web-of-'93 presentation massively undermines his credibility. The Ash On Bikes article gives all the science behind it as well as the technique - without the mystique. It even has lengthy quotes from a man from Castrol Technology Centre supporting the points - touche Mr BMW manual writer!
The 2nd link, to Puma Racing, is helpful too, with more on technique but a focus on cars.
I haven't made up my mind yet about the full-throttle stuff - I've got until Friday morning so plenty more thinking time. But my plan beyond the first 100 miles is to take 2 or 3 days off work for a trip to the Peak District to ride some real hills. I've only passed through the area once before, so any advice on roads to ride and places to stay would be most welcome.