Are you losing servo assistance aswell? I had the 4hz flash come on on my bike a few months back. On investigation I found that there is a spring loaded plate between the rear brake micro switch and the foot pedal. It had pinged out causing the system to be unable to complete it's checks, which in turn lost me servo assistance

Took me a while to find the problem and 1 sec to sort it.
I may be wrong, but that experience would suggest to me that if it is a microswitch problem then loss of servo would be symptom