Tanneman you know a little more than the average guy but still not enough to make the statements you made which are plain wrong...Like your semantics about pumping losses and being an inefficient design and Porsche boxers/flat engines being build for more performance.And yes with your logic the new Harley engine is no real V-twin because it does use 2 crank pins that are 30 degree off which makes it as a 60 degree twin fire and sound like a 90 degree V twin...It does not matter for power but for high rpm reliability as also how much the engine vibrates if the crank has 2 or 3 bearings like the new R18 boxer has.
As also the Porsche 911 GT3 that can be compared easily to the 1250 shift cam except for the 1254 should be a 1333 as both engines have the ability to rev 9000 rpm max...The bore is the same but the Porsche has 4 mm longer stroke which actually limits max piston speed.Not like you said Porsche being smaller in bore & stroke...So it would be no problem at all for BMW a company that knows how to build very powerful and reliable engines like Porsche does naturally aspirated or turbo charged to build a shift cam boxer that makes 150 nm torque and lets say 160 reliable horsepower @ 8500 rpm !
And everybody would be happy and the GS' top-end on par with the 1290 KTM which makes 155 hp or the MS V4 which makes 165 hp on the same dyno where the current GS makes 136 hp and the S1000XR 179 hp.
And I give you this the only inefficiency of a boxer or flat 2/4/6 engine that the intake runners can't be positioned to archive the optimal downdraft for obvious reasons but 125 hp per liter from a naturally aspirated boxer/flat engine like in the GT3 is nothing to be sneered at

As the boxer has so many advantages like low center of gravity,no gyro,no loss of power when applying a drive shaft,protection of riders legs & bike,low center of gravity,less vibration/good balance,easy to service as negative only more aerodynamic drag at high speed come to my mind...And last but not least easy application of Telelever...