Good questions, all.
Any ideas on what fried your stator?
Ideas only at this stage - I'm guessing the epoxy insulation on the copper wiring of the windings was sub-standard.
Alternators generate a fair amount of heat, and internally mounted alternators are usually subject to frightening amounts of heat anyway. (They don't have the benefit of air cooling like external-mount alternators do.) Combine this with an engine environment (including oil which slowly loads up with acids and petroleum residues as time goes on) and you have a very hostile set of living conditions.
Can it be re-built with different components or in a different way to prevent it happening again?
Sure! BMW could have taken a hard look at the '04 to '12 R-series engine, nodded sagely, and said to themselves: 'It ain't broke, so let's not fix it'.

That aside, I made sure to specify that the stator was rebuilt with the highest-quality wire available. (The armature rewinders here in SA usually do this anyway - it makes no sense to have a customer coming back with an alternator that keeps failing when you guarantee your work.) I was assured that the rebuilder used 220C wire. (I wanted 250C, but it's hard to get and very expensive.)
Was/are stators used on pre April 14 bikes sub-standard?
Yup. There is a small, but steadily-increasing history of failures on them, which BMW are probably trying to keep as quiet as possible - because this is exactly the kind of thing that mangles customer confidence and makes people say: 'F*ck this. I'm flogging this piece of s#!t and buying a Triumph Explorer instead.'
And it is not going to get better, because the '13 to April '14 bikes are accumulating miles, and if any of those alternators are faulty, their owners will know about it sooner rather than later.
April 2014 was the point at which BMW started installing the 'new and improved' alternator. It's probably been re-engineered quite substantially: on the Max BMW fiche, the old alternator was listed as weighing 7.5 pounds. The new one is 7.03.
As for its long-term reliability, I have no idea.
Can anything be done to prevent them frying?
- Don't exceed the oil and oil filter replacement intervals.
- Use the best-quality full-synthetic oil you can find.
- Don't run the bike in situations where it's likely to overheat. (I was running at very high road speeds in 38 degrees C - this would sometimes translate to engine temp of 92 to 94 degrees C.)
- Don't do silly things like idling the engine for 20 minutes with the bike on the side stand.
- My contact also basically said that the standard alternator's listed power capacity (510W nominal) is a fairy tale. He says if you have extras like aftermarket spotlights mounted, the alternator can't handle the extra load. Another armature rewinder I talked with about this said he could wind the stator to give extra capacity - but that the regulator/rectifier would not be able to handle the extra current.