OK, similar problem, R1100GS ABS. About six weeks back I was decending the Hardnott pass when I lost the rear break; made life somewhat interesting for a few minutes. Stopped at bottom and had a play with the lever, but no joy, so decided to carry on carefully. About half way to the bottom of Wrynose pass, rear brake re-appeared.
When I got home I checked pads, they were down to about 1mm, so repalced them. I've had no problem since, including doing the RBLR1000, until last Saturday. Having ridden the road from the M6 (J41)to Wigton, when I came to stop in Wigton, no rear brake. I had a poke about with the lever, and they came back. But I did discover both caliper and disc were very hot. (Managed to brand a nice circle device on to my finger end)
On Sunday, decending Winlatter pass, no rear brake when I got to Lorton. Poured a bit of water on caliper and it hissed and spat before boiling off. Again, few minutes wait and play about with lever, and the brakes return.
Now, I can't feel any play in the output bearing. I can roll/push the bike about quite freely. I can spin the wheel quite freely on centre stand. A 2-3 mile run without using rear brake, no probes with heating. But <1 mile run with one light use of rear brake, and caliper is getting warm.
Roy at RGM suggested I'd adjusted the free play out of the lever, so I made sure there's about 1.00mm. I've just stripped and cleaned the caliper again, but it's still binding very slightly.
Fluid change? (Must be due, I've had the bike 2 years now), or any other ideas?
Oh, and I always ride with my foot turned out away from the pedal, so any use of brake is a concious effort.
Cheers,
Dave.