Did you export the route to a device or save as?
I have been experimenting with the route planner lately also using a Nav V. I found that using the Connector app when I exported using "BMW Motorbike (GPX 1.1)" it missed out the via points (or shaping points in Garmin language). But using "Garmin New (GPX 1.1)" it included the via/shaping points. No idea why.
I have just bought Gold so am using Here maps, but even so, I had the issue the OP had.
I think the screenshot in Post #3 are the save as options.