Remove the connector from the coil and test for voltage.
Pin 2 should be 12v with ignition on.
Pin 1 should be a negative string of pulses from the motronic as the engine rotates. You might be able to see this visually with an LED across the terminals.
However, Pin 1 also connects to the tachometer to give you RPM. And as you said the RPM is good when the engine was running, it points to the motronic outputs correct.
I have just had a look, I have x2 wires there, one green and one black. The green wire has a permanent 12V with the ignition on (13.7V in my case as recently fully charged it as a precaution after all the cranking on the starter). The black signal wire (I assume it is signal) is difficult to determine as I only have a volt meter, how should I connect that to give me something I can see visually with a volt meter?
There are a few signs that someone has been into the various looms previously:
The ignition switch connector and its sleeving appear relatively new (bright orange plug, whereas the loom connector is faded orange) - I know it works though, as I am turning the ignition on/off, fuel pump primes, lights on dash illuminate, starter works etc etc.
The wiring leading down from the left and right handlebar switches to their loom connectors has been re-wrapped in Tesa fabric loom tape which is clean (not dusty). Possibly an aesthetic thing by a previous owner though as the original rubber sheaths may have degraded and fallen off, leaving bare wires visible (although all individual wire insulation appears good as I have been through that and re-wrapped it again).
That said, the main loom from the Motronic to all other elements (including the the pair to the coil) remains in its original factory loom tape and hasn't been touched.
I want to go back through the switches again, just to double check, I know the clutch and neutral switch work as the starter button/motor wont do anything when it's in gear but it will when in neutral (or if I pull the clutch in when in gear, the starter will work). I know the kill switch is ok as the fuel pump primes each time it's flicked on/off - but I need to understand the side stand switch - If I am correct, the side stand switch shouldn't make any difference (working or not) if the engine is in neutral, as the Motronic only looks at the side stand switch if you move out of neutral and into gear with the side stand down - Is that right?